Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs186732074 chr9:124283630 A/G 1.79E-6 488 30.97 31.87 24.27 KM Plot
PRAD rs1868257 chr2:107458276 G/C 0.000136 490 30.73 31.13 32.63 KM Plot
PRAD rs187145857 chr16:58036349 T/A 2.34E-5 485 30.75 31.8 44.3 KM Plot
PRAD rs187358143 chr1:93665007 C/T 1.07E-8 494 31.28 28.67 9.17 KM Plot
PRAD rs188033258 chr11:129982315 C/G 2.02E-6 493 30.97 31.3 22.8 KM Plot
PRAD rs1884745 chr20:426057 C/T 7.32E-8 494 31.27 24.13 21.2 KM Plot
PRAD rs1887936 chr14:32688188 T/G 0.000141 491 31.25 28.93 28.62 KM Plot
PRAD rs1887937 chr14:32681881 G/A 0.000154 487 31.25 28.93 28.62 KM Plot
PRAD rs189879699 chr5:154215211 G/A 0 493 29.8 37.43 4.87 KM Plot
PRAD rs190120556 chr11:6927871 C/T 9.77E-13 491 30.97 28.67 18.13 KM Plot
PRAD rs1907637 chr3:151104838 A/G 3.06E-6 489 17.9 28.65 31.43 KM Plot
PRAD rs191024235 chr5:154222398 T/A 0 493 29.97 36.05 12.67 KM Plot
PRAD rs191432976 chr1:202709236 C/A 1.0E-5 493 30.93 29.5 27.92 KM Plot
PRAD rs191767922 chr9:72956973 C/T 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs1919318 chr4:165646683 T/C 5.68E-5 492 30.77 32.9 44.32 KM Plot